Display Options: Structure:  

Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2bmv
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1h4wRCSB PDB    PDBbindBEN
1braRCSB PDB    PDBbindBEN
1btyRCSB PDB    PDBbindBEN
1ce5RCSB PDB    PDBbindBEN
1j14RCSB PDB    PDBbindBEN
1j15RCSB PDB    PDBbindBEN
1j16RCSB PDB    PDBbindBEN
1ossRCSB PDB    PDBbindBEN
1rtfRCSB PDB    PDBbindBEN
1v2jRCSB PDB    PDBbindBEN
1v2lRCSB PDB    PDBbindBEN
1v2mRCSB PDB    PDBbindBEN
1v2sRCSB PDB    PDBbindBEN
1v2uRCSB PDB    PDBbindBEN
1v2vRCSB PDB    PDBbindBEN
2j9nRCSB PDB    PDBbindBEN
3atlRCSB PDB    PDBbindBEN
3gy7RCSB PDB    PDBbindBEN
3rxeRCSB PDB    PDBbindBEN

Entry Information
PDB ID2bmv
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameFlavodoxin
Ligand NameBEN
EC.Number E.C.-.-.-.-
Resolution 2.11(Å)
Affinity (Kd/Ki/IC50)Kd=10mM
Release Year2006
Protein/NA SequenceCheck fasta file
Primary Reference(2007) Proteins Vol. 69: pp. 581
Ligand Properties
Formula C7H9N2
Molecular Weight 121.160
Exact Mass 121.077
No. of atoms 18
No. of bonds 18
Polar Surface Area 51.61
LOGP Value 2.71      (Computed with XLOGP3)
-0.15      (Computed with Open Babel)
Drug likenessNo. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O25776  
Entrez Gene IDNCBI Entrez Gene ID: 899921  
ASDInformation of known allosteric effects of PDB entries

This site has been visited times since Nov 2007.

Address: LingLing Road 345, Shanghai, 200032, China      ICP NO: Shanghai-05005485-2
Group Leader: wangrx@mail.sioc.ac.cn      Tel: +86-21-54925128      Webmaster: liuhai@mail.sioc.ac.cn
Copyright ©2007-2013    Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences