Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3dxh
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1afkRCSB PDB    PDBbind124aa, >1AFK:B|PDBID|CHAIN|... at 99%
1aflRCSB PDB    PDBbind124aa, >1AFL:B|PDBID|CHAIN|... at 99%
1dfjRCSB PDB    PDBbind124aa, >1DFJ:E|PDBID|CHAIN|... at 99%
1j7zRCSB PDB    PDBbind104aa, >1J7Z:B|PDBID|CHAIN|... at 99%
1j80RCSB PDB    PDBbind104aa, >1J80:B|PDBID|CHAIN|... at 99%
1j81RCSB PDB    PDBbind104aa, >1J81:B|PDBID|CHAIN|... at 99%
1jn4RCSB PDB    PDBbind124aa, >1JN4:B|PDBID|CHAIN|... at 99%
1jvuRCSB PDB    PDBbind124aa, >1JVU:B|PDBID|CHAIN|... at 99%
1o0fRCSB PDB    PDBbind124aa, >1O0F:B|PDBID|CHAIN|... at 99%
1o0hRCSB PDB    PDBbind124aa, >1O0H:B|PDBID|CHAIN|... at 99%
1o0mRCSB PDB    PDBbind124aa, >1O0M:B|PDBID|CHAIN|... at 99%
1o0nRCSB PDB    PDBbind124aa, >1O0N:B|PDBID|CHAIN|... at 99%
1o0oRCSB PDB    PDBbind124aa, >1O0O:B|PDBID|CHAIN|... at 99%
1qhcRCSB PDB    PDBbind124aa, >1QHC:B|PDBID|CHAIN|... at 99%
1rnmRCSB PDB    PDBbind124aa, >1RNM:E|PDBID|CHAIN|... at 99%
1rpfRCSB PDB    PDBbind124aa, >1RPF:A|PDBID|CHAIN|... at 99%
1u1bRCSB PDB    PDBbind124aa, >1U1B:B|PDBID|CHAIN|... at 99%
1w4oRCSB PDB    PDBbind124aa, >1W4O:B|PDBID|CHAIN|... at 99%
1w4pRCSB PDB    PDBbind124aa, >1W4P:B|PDBID|CHAIN|... at 99%
1w4qRCSB PDB    PDBbind124aa, >1W4Q:B|PDBID|CHAIN|... at 99%
1z6dRCSB PDB    PDBbind124aa, >1Z6D:B|PDBID|CHAIN|... at 99%
1z6sRCSB PDB    PDBbind124aa, >1Z6S:B|PDBID|CHAIN|... at 99%
2g8rRCSB PDB    PDBbind124aa, >2G8R:B|PDBID|CHAIN|... at 99%
2w5gRCSB PDB    PDBbind124aa, >2W5G:B|PDBID|CHAIN|... at 99%
2w5iRCSB PDB    PDBbind124aa, >2W5I:B|PDBID|CHAIN|... at 99%
2xogRCSB PDB    PDBbind124aa, >2XOG:B|PDBID|CHAIN|... at 99%
2xoiRCSB PDB    PDBbind124aa, >2XOI:B|PDBID|CHAIN|... at 99%
3d6oRCSB PDB    PDBbind124aa, >3D6O:B|PDBID|CHAIN|... at 99%
3d6pRCSB PDB    PDBbind124aa, >3D6P:B|PDBID|CHAIN|... at 99%
3d6qRCSB PDB    PDBbind124aa, >3D6Q:B|PDBID|CHAIN|... at 99%
3d7bRCSB PDB    PDBbind124aa, >3D7B:B|PDBID|CHAIN|... at 99%
3d8yRCSB PDB    PDBbind124aa, >3D8Y:B|PDBID|CHAIN|... at 99%
3d8zRCSB PDB    PDBbind124aa, >3D8Z:B|PDBID|CHAIN|... at 99%
3dxgRCSB PDB    PDBbind124aa, >3DXG:B|PDBID|CHAIN|... at 99%
3lxoRCSB PDB    PDBbind124aa, >3LXO:A|PDBID|CHAIN|... at 99%
4g8vRCSB PDB    PDBbind124aa, >4G8V:B|PDBID|CHAIN|... at 99%
4g8yRCSB PDB    PDBbind124aa, >4G8Y:B|PDBID|CHAIN|... at 99%
4g90RCSB PDB    PDBbind124aa, >4G90:B|PDBID|CHAIN|... at 99%
4peqRCSB PDB    PDBbind124aa, >4PEQ:C|PDBID|CHAIN|... at 99%
4rskRCSB PDB    PDBbind124aa, >4RSK:A|PDBID|CHAIN|... at 96%
4wypRCSB PDB    PDBbind125aa, >4WYP:B|PDBID|CHAIN|... at 100%
4wyzRCSB PDB    PDBbind125aa, >4WYZ:B|PDBID|CHAIN|... at 100%
6rsaRCSB PDB    PDBbind124aa, >6RSA:A|PDBID|CHAIN|... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1gwwRCSB PDB    PDBbindUDP
1gx0RCSB PDB    PDBbindUDP
1gx4RCSB PDB    PDBbindUDP
1o7oRCSB PDB    PDBbindUDP
2vl8RCSB PDB    PDBbindUDP
3djqRCSB PDB    PDBbindUDP
4ay5RCSB PDB    PDBbindUDP
4de7RCSB PDB    PDBbindUDP
4dmwRCSB PDB    PDBbindUDP
4gz3RCSB PDB    PDBbindUDP
6eytRCSB PDB    PDBbindUDP

Entry Information
PDB ID3dxh
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameribonuclease A (RNase A)
Ligand NameUDP
EC.Number E.C.3.1.27.5
Resolution 1.4(Å)
Affinity (Kd/Ki/IC50)Ki=0.65mM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference(2009) Acta Crystallogr.,Sect.F 65, pp. 671–677
Ligand Properties
Formula C9H16N2O12P2
Molecular Weight 406.177
Exact Mass 406.018
No. of atoms 41
No. of bonds 42
Polar Surface Area 251.34
LOGP Value -5.29      (Computed with XLOGP3)
-3.49      (Computed with Open Babel)
Drug likenessNo. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P61823  
Entrez Gene IDNCBI Entrez Gene ID: 282340  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Address: 826 Zhangheng Road, Shanghai 201203, People's Republic of China      ICP NO: Shanghai-05005485-2
Group Leader: wangrx@fudan.edu.cn      Tel: +86-21-54925128      Webmaster: liuhai@mail.sioc.ac.cn
Copyright ©2007-2020    Department of Medicinal Chemistry, School of Pharmacy, Fudan University, P.R. China