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Related entries of code: 3u9q
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1i7iRCSB PDB    PDBbind292aa, >1I7I:B|PDBID|CHAIN|... at 98%
1nyxRCSB PDB    PDBbind276aa, >1NYX:B|PDBID|CHAIN|... at 100%
1zeoRCSB PDB    PDBbind277aa, >1ZEO:B|PDBID|CHAIN|... at 99%
2athRCSB PDB    PDBbind271aa, >2ATH:B|PDBID|CHAIN|... at 100%
2p4yRCSB PDB    PDBbind277aa, >2P4Y:B|PDBID|CHAIN|... at 99%
2f4bRCSB PDB    PDBbind271aa, >2F4B:B|PDBID|CHAIN|... at 100%
2g0gRCSB PDB    PDBbind271aa, >2G0G:B|PDBID|CHAIN|... at 100%
2g0hRCSB PDB    PDBbind271aa, >2G0H:B|PDBID|CHAIN|... at 100%
2gtkRCSB PDB    PDBbind271aa, >2GTK:A|PDBID|CHAIN|... at 100%
2i4jRCSB PDB    PDBbind286aa, >2I4J:B|PDBID|CHAIN|... at 100%
2i4pRCSB PDB    PDBbind286aa, >2I4P:B|PDBID|CHAIN|... at 100%
2i4zRCSB PDB    PDBbind286aa, >2I4Z:B|PDBID|CHAIN|... at 100%
2q8sRCSB PDB    PDBbind271aa, >2Q8S:B|PDBID|CHAIN|... at 100%
2yfeRCSB PDB    PDBbind287aa, >2YFE:B|PDBID|CHAIN|... at 100%
3adsRCSB PDB    PDBbind287aa, >3ADS:B|PDBID|CHAIN|... at 100%
3adtRCSB PDB    PDBbind287aa, >3ADT:B|PDBID|CHAIN|... at 100%
3aduRCSB PDB    PDBbind287aa, >3ADU:B|PDBID|CHAIN|... at 100%
3advRCSB PDB    PDBbind287aa, >3ADV:B|PDBID|CHAIN|... at 100%
3bc5RCSB PDB    PDBbind296aa, >3BC5:A|PDBID|CHAIN|... at 100%
3ia6RCSB PDB    PDBbind271aa, >3IA6:B|PDBID|CHAIN|... at 100%
3osiRCSB PDB    PDBbind285aa, >3OSI:B|PDBID|CHAIN|... at 100%
3oswRCSB PDB    PDBbind285aa, >3OSW:B|PDBID|CHAIN|... at 100%
3r5nRCSB PDB    PDBbind274aa, >3R5N:A|PDBID|CHAIN|... at 100%
3r8iRCSB PDB    PDBbind287aa, >3R8I:B|PDBID|CHAIN|... at 100%
3sz1RCSB PDB    PDBbind278aa, >3SZ1:B|PDBID|CHAIN|... at 100%
3ty0RCSB PDB    PDBbind277aa, >3TY0:B|PDBID|CHAIN|... at 99%
4a4vRCSB PDB    PDBbind287aa, >4A4V:B|PDBID|CHAIN|... at 100%
4a4wRCSB PDB    PDBbind287aa, >4A4W:B|PDBID|CHAIN|... at 100%
4jazRCSB PDB    PDBbind287aa, >4JAZ:B|PDBID|CHAIN|... at 100%
4prgRCSB PDB    PDBbind270aa, >4PRG:D|PDBID|CHAIN|... at 100%
4r06RCSB PDB    PDBbind273aa, >4R06:B|PDBID|CHAIN|... at 100%
4xtaRCSB PDB    PDBbind278aa, >4XTA:B|PDBID|CHAIN|... at 100%
4xuhRCSB PDB    PDBbind278aa, >4XUH:B|PDBID|CHAIN|... at 100%
4xumRCSB PDB    PDBbind278aa, >4XUM:B|PDBID|CHAIN|... at 100%
4y29RCSB PDB    PDBbind269aa, >4Y29:A|PDBID|CHAIN|... at 100%
5f9bRCSB PDB    PDBbind287aa, >5F9B:B|PDBID|CHAIN|... at 100%
5lsgRCSB PDB    PDBbind304aa, >5LSG:B|PDBID|CHAIN|... at 100%
5u5lRCSB PDB    PDBbind273aa, >5U5L:B|PDBID|CHAIN|... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3nq3RCSB PDB    PDBbindDKA
4tjzRCSB PDB    PDBbindDKA

Entry Information
PDB ID3u9q
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameLigand binding domain of PPAR gamma in presence of PGC-1a peptide
Ligand NameDKA
EC.Number E.C.-.-.-.-
Resolution 1.52(Å)
Affinity (Kd/Ki/IC50)Ki=41.7uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference(2012) J.Biol.Chem. Vol. 287: pp. 183-195
Ligand Properties
Formula C10H20O2
Molecular Weight 172.265
Exact Mass 172.146
No. of atoms 32
No. of bonds 31
Polar Surface Area 37.3
LOGP Value 5.31      (Computed with XLOGP3)
3.21      (Computed with Open Babel)
Drug likenessNo. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9UBK2  P37231  
Entrez Gene IDNCBI Entrez Gene ID: 10891  5468  
ASDInformation of known allosteric effects of PDB entries

 
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