Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3ztd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3zrcRCSB PDB    PDBbind97aa, >3ZRC:K|PDBID|CHAIN|... at 100%
3ztcRCSB PDB    PDBbind97aa, >3ZTC:K|PDBID|CHAIN|... at 100%
4awjRCSB PDB    PDBbind97aa, >4AWJ:K|PDBID|CHAIN|... at 100%
4b95RCSB PDB    PDBbind97aa, >4B95:K|PDBID|CHAIN|... at 100%
4b9kRCSB PDB    PDBbind97aa, >4B9K:K|PDBID|CHAIN|... at 100%
4bksRCSB PDB    PDBbind97aa, >4BKS:K|PDBID|CHAIN|... at 100%
4bktRCSB PDB    PDBbind97aa, >4BKT:K|PDBID|CHAIN|... at 100%
4jghRCSB PDB    PDBbind96aa, >4JGH:C|PDBID|CHAIN|... at 98%
4w9cRCSB PDB    PDBbind97aa, >4W9C:K|PDBID|CHAIN|... at 100%
4w9dRCSB PDB    PDBbind97aa, >4W9D:K|PDBID|CHAIN|... at 100%
4w9eRCSB PDB    PDBbind97aa, >4W9E:K|PDBID|CHAIN|... at 100%
4w9fRCSB PDB    PDBbind97aa, >4W9F:K|PDBID|CHAIN|... at 100%
4w9gRCSB PDB    PDBbind97aa, >4W9G:K|PDBID|CHAIN|... at 100%
4w9hRCSB PDB    PDBbind97aa, >4W9H:K|PDBID|CHAIN|... at 100%
4w9iRCSB PDB    PDBbind97aa, >4W9I:K|PDBID|CHAIN|... at 100%
4w9jRCSB PDB    PDBbind97aa, >4W9J:K|PDBID|CHAIN|... at 100%
4w9kRCSB PDB    PDBbind97aa, >4W9K:K|PDBID|CHAIN|... at 100%
4w9lRCSB PDB    PDBbind97aa, >4W9L:K|PDBID|CHAIN|... at 100%
5lliRCSB PDB    PDBbind97aa, >5LLI:K|PDBID|CHAIN|... at 100%
5n4wRCSB PDB    PDBbind97aa, >5N4W:C|PDBID|CHAIN|... at 100%
5nvvRCSB PDB    PDBbind97aa, >5NVV:K|PDBID|CHAIN|... at 100%
5nvwRCSB PDB    PDBbind97aa, >5NVW:K|PDBID|CHAIN|... at 100%
5nvxRCSB PDB    PDBbind97aa, >5NVX:K|PDBID|CHAIN|... at 100%
5nvyRCSB PDB    PDBbind97aa, >5NVY:K|PDBID|CHAIN|... at 100%
5nvzRCSB PDB    PDBbind97aa, >5NVZ:K|PDBID|CHAIN|... at 100%
5nw0RCSB PDB    PDBbind97aa, >5NW0:K|PDBID|CHAIN|... at 100%
5nw1RCSB PDB    PDBbind97aa, >5NW1:K|PDBID|CHAIN|... at 100%
5nw2RCSB PDB    PDBbind97aa, >5NW2:K|PDBID|CHAIN|... at 100%
5t35RCSB PDB    PDBbind97aa, >5T35:G|PDBID|CHAIN|... at 100%
6fmiRCSB PDB    PDBbind97aa, >6FMI:E|PDBID|CHAIN|... at 100%
6fmjRCSB PDB    PDBbind97aa, >6FMJ:K|PDBID|CHAIN|... at 100%
6fmkRCSB PDB    PDBbind97aa, >6FMK:K|PDBID|CHAIN|... at 100%
6gfyRCSB PDB    PDBbind97aa, >6GFY:K|PDBID|CHAIN|... at 100%
6gfzRCSB PDB    PDBbind97aa, >6GFZ:K|PDBID|CHAIN|... at 100%
6gmqRCSB PDB    PDBbind97aa, >6GMQ:K|PDBID|CHAIN|... at 100%
6gmxRCSB PDB    PDBbind97aa, >6GMX:K|PDBID|CHAIN|... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3ztd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameternary complex pVHL-ElonginC-ElonginB (VCB)
Ligand NameZTD
EC.Number E.C.-.-.-.-
Resolution 2.79(Å)
Affinity (Kd/Ki/IC50)Kd=96.2uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference(2012) Chem.Biol. Vol. 19: pp. 1300-1312
Ligand Properties
Formula C20H23N3O6
Molecular Weight 401.413
Exact Mass 401.159
No. of atoms 52
No. of bonds 54
Polar Surface Area 121.97
LOGP Value 0.44      (Computed with XLOGP3)
0.92      (Computed with Open Babel)
Drug likenessNo. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P40337  Q15369  Q15370  
Entrez Gene IDNCBI Entrez Gene ID: 7428  6921  6923  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Address: LingLing Road 345, Shanghai, 200032, China      ICP NO: Shanghai-05005485-2
Group Leader: wangrx@mail.sioc.ac.cn      Tel: +86-21-54925128      Webmaster: liuhai@mail.sioc.ac.cn
Copyright ©2007-2019    Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences