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Related entries of code: 4dgb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ak4RCSB PDB    PDBbind165aa, >1ak4_B... at 100%
1nmkRCSB PDB    PDBbind165aa, >1nmk_B... at 100%
1w8lRCSB PDB    PDBbind165aa, >1w8l_A... at 100%
1w8mRCSB PDB    PDBbind165aa, >1w8m_A... at 100%
1yndRCSB PDB    PDBbind165aa, >1ynd_B... at 100%
2ms4RCSB PDB    PDBbind165aa, >2ms4_A... at 100%
2x2dRCSB PDB    PDBbind165aa, >2x2d_C... at 100%
4dgeRCSB PDB    PDBbind165aa, >4dge_B... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1guiRCSB PDB    PDBbind6-mer
1d8eRCSB PDB    PDBbind6-mer
1elrRCSB PDB    PDBbind6-mer
1eppRCSB PDB    PDBbind6-mer
1evhRCSB PDB    PDBbind6-mer
1fq5RCSB PDB    PDBbind6-mer
1gvuRCSB PDB    PDBbind6-mer
1gvxRCSB PDB    PDBbind6-mer
1gwmRCSB PDB    PDBbind6-mer
1iiqRCSB PDB    PDBbind6-mer
1jp5RCSB PDB    PDBbind6-mer
1k9rRCSB PDB    PDBbind6-mer
1lybRCSB PDB    PDBbind6-mer
1lzqRCSB PDB    PDBbind6-mer
1m0bRCSB PDB    PDBbind6-mer
1njtRCSB PDB    PDBbind6-mer
1njuRCSB PDB    PDBbind6-mer
1nkmRCSB PDB    PDBbind6-mer
1okvRCSB PDB    PDBbind6-mer
1ol1RCSB PDB    PDBbind6-mer
1ol2RCSB PDB    PDBbind6-mer
1q4kRCSB PDB    PDBbind6-mer
1rhkRCSB PDB    PDBbind6-mer
1urcRCSB PDB    PDBbind6-mer
1xt3RCSB PDB    PDBbind6-mer
1zsfRCSB PDB    PDBbind6-mer
1zsrRCSB PDB    PDBbind6-mer
2h65RCSB PDB    PDBbind6-mer
2itkRCSB PDB    PDBbind6-mer
2oqsRCSB PDB    PDBbind6-mer
2r0zRCSB PDB    PDBbind6-mer
2w76RCSB PDB    PDBbind6-mer
3avzRCSB PDB    PDBbind6-mer
3aw0RCSB PDB    PDBbind6-mer
3bv9RCSB PDB    PDBbind6-mer
3dcrRCSB PDB    PDBbind6-mer
3driRCSB PDB    PDBbind6-mer
3eysRCSB PDB    PDBbind6-mer
3fv3RCSB PDB    PDBbind6-mer
3fwvRCSB PDB    PDBbind6-mer
3gxyRCSB PDB    PDBbind6-mer
3h6zRCSB PDB    PDBbind6-mer
3hikRCSB PDB    PDBbind6-mer
3iquRCSB PDB    PDBbind6-mer
3iqvRCSB PDB    PDBbind6-mer
3kd7RCSB PDB    PDBbind6-mer
3luoRCSB PDB    PDBbind6-mer
3nthRCSB PDB    PDBbind6-mer
3q4jRCSB PDB    PDBbind6-mer
3q4kRCSB PDB    PDBbind6-mer
3q4lRCSB PDB    PDBbind6-mer
3r5jRCSB PDB    PDBbind6-mer
3r6gRCSB PDB    PDBbind6-mer
3rjmRCSB PDB    PDBbind6-mer
3sm1RCSB PDB    PDBbind6-mer
3snaRCSB PDB    PDBbind6-mer
3snbRCSB PDB    PDBbind6-mer
3sncRCSB PDB    PDBbind6-mer
3sndRCSB PDB    PDBbind6-mer
3u51RCSB PDB    PDBbind6-mer
3ux0RCSB PDB    PDBbind6-mer
3zmtRCSB PDB    PDBbind6-mer
3zmuRCSB PDB    PDBbind6-mer
3zmvRCSB PDB    PDBbind6-mer
3zmzRCSB PDB    PDBbind6-mer
3zn0RCSB PDB    PDBbind6-mer
3zn1RCSB PDB    PDBbind6-mer
4a0jRCSB PDB    PDBbind6-mer
4apoRCSB PDB    PDBbind6-mer
4b3bRCSB PDB    PDBbind6-mer
4b8yRCSB PDB    PDBbind6-mer
4iknRCSB PDB    PDBbind6-mer
4er2RCSB PDB    PDBbind6-mer
4exhRCSB PDB    PDBbind6-mer
4fr3RCSB PDB    PDBbind6-mer
4fysRCSB PDB    PDBbind6-mer
4fz3RCSB PDB    PDBbind6-mer
4gyeRCSB PDB    PDBbind6-mer
4gzfRCSB PDB    PDBbind6-mer
4ifiRCSB PDB    PDBbind6-mer
4j09RCSB PDB    PDBbind6-mer
4j77RCSB PDB    PDBbind6-mer
4j79RCSB PDB    PDBbind6-mer
4j86RCSB PDB    PDBbind6-mer
4j8bRCSB PDB    PDBbind6-mer
4jj7RCSB PDB    PDBbind6-mer
4jj8RCSB PDB    PDBbind6-mer
4jjeRCSB PDB    PDBbind6-mer
4jr0RCSB PDB    PDBbind6-mer
4k3oRCSB PDB    PDBbind6-Mer
4k3pRCSB PDB    PDBbind6-Mer
4k3qRCSB PDB    PDBbind6-Mer
4k3rRCSB PDB    PDBbind6-Mer
4ny3RCSB PDB    PDBbind6-mer
4o9wRCSB PDB    PDBbind6-mer
4ou3RCSB PDB    PDBbind6-mer
4tszRCSB PDB    PDBbind6-mer
4tt2RCSB PDB    PDBbind6-mer
4wk2RCSB PDB    PDBbind6-mer
4wvtRCSB PDB    PDBbind6-mer
4x9rRCSB PDB    PDBbind6-mer
4x9vRCSB PDB    PDBbind6-mer
4ynlRCSB PDB    PDBbind6-mer
5a2iRCSB PDB    PDBbind6-mer
5a2jRCSB PDB    PDBbind6-mer
5a2kRCSB PDB    PDBbind6-mer
5e1bRCSB PDB    PDBbind6-mer
5e1dRCSB PDB    PDBbind6-mer
5e1mRCSB PDB    PDBbind6-mer
5e1oRCSB PDB    PDBbind6-mer
5er1RCSB PDB    PDBbind6-mer
5er2RCSB PDB    PDBbind6-mer
5hvpRCSB PDB    PDBbind6-mer
6aprRCSB PDB    PDBbind6-mer
6cgtRCSB PDB    PDBbind6-mer

Entry Information
PDB ID4dgb
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTRIMCyp
Ligand Name6-mer
EC.Number E.C.5.2.1.8
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=130uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference(2012) Nat.Struct.Mol.Biol. Vol. 19: pp. 411-416
Ligand Properties
Formula C26H43N6O7
Molecular Weight 551.656
Exact Mass 551.319
No. of atoms 82
No. of bonds 84
Polar Surface Area 181.83
LOGP Value -1.22      (Computed with XLOGP3)
0.55      (Computed with Open Babel)
Drug likenessNo. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 16
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P04590  P62940  
Entrez Gene IDNCBI Entrez Gene ID: 574102  
ASDInformation of known allosteric effects of PDB entries

 
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