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Related entries of code: 4mb9
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4em7RCSB PDB    PDBbind226aa, >4EM7:A|PDBID|CHAIN|... *
4emvRCSB PDB    PDBbind226aa, >4EMV:A|PDBID|CHAIN|... at 100%
4lp0RCSB PDB    PDBbind226aa, >4LP0:A|PDBID|CHAIN|... at 100%
4lpbRCSB PDB    PDBbind226aa, >4LPB:A|PDBID|CHAIN|... at 100%
4mbcRCSB PDB    PDBbind226aa, >4MBC:A|PDBID|CHAIN|... at 100%
4motRCSB PDB    PDBbind226aa, >4MOT:A|PDBID|CHAIN|... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4mb9
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDNA topoisomerase IV, B subunit
Ligand Name28F
EC.Number E.C.
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)IC50=10nM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference(2013) J.Med.Chem. Vol. 56: pp. 8834-8848
Ligand Properties
Formula C18H20N6O3S
Molecular Weight 400.455
Exact Mass 400.132
No. of atoms 48
No. of bonds 51
Polar Surface Area 139.39
LOGP Value 1.80      (Computed with XLOGP3)
3.17      (Computed with Open Babel)
Drug likenessNo. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

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