Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 1ntk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1nu1RCSB PDB    PDBbind56aa, >1NU1_11|Chain... at 100%
1sqbRCSB PDB    PDBbind56aa, >1SQB_11|Chain... at 98%
1sqpRCSB PDB    PDBbind56aa, >1SQP_11|Chain... at 98%
1sqqRCSB PDB    PDBbind56aa, >1SQQ_11|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID1ntk
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMitochondrial Cytochrome bc1
Ligand NameAY1
EC.Number E.C.1.10.2.2
Resolution 2.6(Å)
Affinity (Kd/Ki/IC50)Kd=32pM
Release Year2003
Protein/NA SequenceCheck fasta file
Primary Reference Biochemistry. (2003) 42, pp. 9067-80
Ligand Properties
Formula C27H38N2O9
Molecular Weight 534.599
Exact Mass 534.258
No. of atoms 76
No. of bonds 77
Polar Surface Area 154.17
LOGP Value 4.50      (Computed with XLOGP3)
3.45      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00125  P00126  P00129  P00130  P00157  P07552  P13271  P13272  P23004  P31800  
Entrez Gene IDNCBI Entrez Gene ID: 512500  613899  616871  616109  3283889  281570  286885  287020  282394  282393  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com