Browse entries in the PDBbind-CN Database

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Related entries of code: 1oko
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2vxjRCSB PDB    PDBbind121aa, >2VXJ_1|Chains... at 100%
2wyfRCSB PDB    PDBbind121aa, >2WYF_1|Chains... at 100%
3zybRCSB PDB    PDBbind122aa, >3ZYB_1|Chains... *
3zyfRCSB PDB    PDBbind122aa, >3ZYF_1|Chains... at 100%
3zyhRCSB PDB    PDBbind122aa, >3ZYH_1|Chains... at 100%
4a6sRCSB PDB    PDBbind121aa, >4A6S_1|Chains... at 100%
4ljhRCSB PDB    PDBbind122aa, >4LJH_1|Chains... at 100%
4lk6RCSB PDB    PDBbind121aa, >4LK6_1|Chains... at 100%
4lk7RCSB PDB    PDBbind121aa, >4LK7_1|Chains... at 100%
4lkdRCSB PDB    PDBbind121aa, >4LKD_1|Chains... at 100%
4lkeRCSB PDB    PDBbind121aa, >4LKE_1|Chains... at 100%
4lkfRCSB PDB    PDBbind121aa, >4LKF_1|Chains... at 100%
4yw6RCSB PDB    PDBbind121aa, >4YW6_1|Chains... at 100%
4yw7RCSB PDB    PDBbind121aa, >4YW7_1|Chains... at 100%
4ywaRCSB PDB    PDBbind121aa, >4YWA_1|Chains... at 100%
5d21RCSB PDB    PDBbind121aa, >5D21_1|Chains... at 100%
5mihRCSB PDB    PDBbind121aa, >5MIH_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1pumRCSB PDB    PDBbindGLB
Entry Information
PDB ID1oko
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namepa-i galactophilic lectin
Ligand NameGLB
EC.Number E.C.-.-.-.-
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)Kd=29uM
Release Year2003
Protein/NA SequenceCheck fasta file
Primary Reference FEBS Lett.v555;pp.297
Ligand Properties
Formula C6H12O6
Molecular Weight 180.156
Exact Mass 180.063
No. of atoms 24
No. of bonds 24
Polar Surface Area 110.38
LOGP Value -2.59      (Computed with XLOGP3)
-3.22      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q05097  
Entrez Gene IDNCBI Entrez Gene ID: 882335  
ASDInformation of known allosteric effects of PDB entries
 
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