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Related entries of code: 1pfy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1pfuRCSB PDB    PDBbind551aa, >1PFU:A|PDBID|CHAIN|... *
1pg2RCSB PDB    PDBbind551aa, >1PG2:A|PDBID|CHAIN|... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID1pfy
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namemethionyl-trna synthetase
Ligand NameMSP
EC.Number E.C.
Resolution 1.93(Å)
Affinity (Kd/Ki/IC50)IC50=7nM
Release Year2004
Protein/NA SequenceCheck fasta file
Primary Reference J.Mol.Biol. v332 pp. 59-72, 2003
Ligand Properties
Formula C15H24N7O7S2
Molecular Weight 478.524
Exact Mass 478.118
No. of atoms 55
No. of bonds 57
Polar Surface Area 253.1
LOGP Value -2.71      (Computed with XLOGP3)
-1.18      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00959  
Entrez Gene IDNCBI Entrez Gene ID: 946643  
ASDInformation of known allosteric effects of PDB entries

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