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Related entries of code: 1rnt
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1b2mRCSB PDB    PDBbind104aa, >1B2M:B|PDBID|CHAIN|... at 100%
1detRCSB PDB    PDBbind104aa, >1DET:A|PDBID|CHAIN|... at 100%
1rgkRCSB PDB    PDBbind104aa, >1RGK:A|PDBID|CHAIN|... at 98%
1rglRCSB PDB    PDBbind104aa, >1RGL:A|PDBID|CHAIN|... at 98%
4odkRCSB PDB    PDBbind16aa, >4ODK:C|PDBID|CHAIN|... at 93%
6rntRCSB PDB    PDBbind104aa, >6RNT:A|PDBID|CHAIN|... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1detRCSB PDB    PDBbind2GP
1rglRCSB PDB    PDBbind2GP

Entry Information
PDB ID1rnt
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameribonuclease T1
Ligand Name2GP
EC.Number E.C.3.1.27.3
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Kd=6.5uM
Release Year1987
Protein/NA SequenceCheck fasta file
Primary Reference Acta Crystallogr.,Sect.Bv43;pp.549
Ligand Properties
Formula C10H15N5O8P
Molecular Weight 364.229
Exact Mass 364.066
No. of atoms 39
No. of bonds 41
Polar Surface Area 222.79
LOGP Value -3.99      (Computed with XLOGP3)
-2.43      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00651  
Entrez Gene IDNCBI Entrez Gene ID: 5997907  
ASDInformation of known allosteric effects of PDB entries

 
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