Browse entries in the PDBbind-CN Database

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Related entries of code: 1s5z
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1buxRCSB PDB    PDBbind155aa, >1BUX_1|Chains... *
1hiyRCSB PDB    PDBbind155aa, >1HIY_1|Chains... at 100%
1mn9RCSB PDB    PDBbind155aa, >1MN9_1|Chains... at 99%
4cp5RCSB PDB    PDBbind155aa, >4CP5_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID1s5z
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameNucleoside diphosphate (NDP) kinase
Ligand NameSON
EC.Number E.C.2.7.4.6
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=0.62mM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference (2005) Med.Chem. Vol. 1: pp. 529-536
Ligand Properties
Formula C12H17N5O8P
Molecular Weight 390.266
Exact Mass 390.081
No. of atoms 43
No. of bonds 45
Polar Surface Area 219.89
LOGP Value -3.84      (Computed with XLOGP3)
-2.11      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P22887  
Entrez Gene IDNCBI Entrez Gene ID: 8618831  8619145  
ASDInformation of known allosteric effects of PDB entries

 
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