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Related entries of code: 1y1m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1pb8RCSB PDB    PDBbind292aa, >1PB8:A|PDBID|CHAIN|... *
1pb9RCSB PDB    PDBbind292aa, >1PB9:A|PDBID|CHAIN|... at 100%
1pbqRCSB PDB    PDBbind292aa, >1PBQ:B|PDBID|CHAIN|... at 99%
1y1zRCSB PDB    PDBbind292aa, >1Y1Z:A|PDBID|CHAIN|... at 99%
1y20RCSB PDB    PDBbind292aa, >1Y20:A|PDBID|CHAIN|... at 99%
4kfqRCSB PDB    PDBbind292aa, >4KFQ:B|PDBID|CHAIN|... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID1y1m
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameglutamate [nmda] receptor
Ligand NameAC5
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=15.3mM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference Neuron v47 pp. 71-84, 2005
Ligand Properties
Formula C6H12NO2
Molecular Weight 130.165
Exact Mass 130.087
No. of atoms 21
No. of bonds 21
Polar Surface Area 64.94
LOGP Value -1.46      (Computed with XLOGP3)
-0.37      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P35439  
Entrez Gene IDNCBI Entrez Gene ID: 24408  
ASDInformation of known allosteric effects of PDB entries

 
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