Browse entries in the PDBbind-CN Database

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Related entries of code: 2gfd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2o1vRCSB PDB    PDBbind666aa, >2O1V_1|Chains... *
5in9RCSB PDB    PDBbind233aa, >5IN9_1|Chains... at 97%
5wmtRCSB PDB    PDBbind236aa, >5WMT_1|Chains... at 96%
6aolRCSB PDB    PDBbind233aa, >6AOL_1|Chain... at 97%
6aomRCSB PDB    PDBbind233aa, >6AOM_1|Chains... at 97%
6bawRCSB PDB    PDBbind236aa, >6BAW_1|Chains... at 96%
6c91RCSB PDB    PDBbind236aa, >6C91_1|Chains... at 96%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2fxsRCSB PDB    PDBbindRDA

Entry Information
PDB ID2gfd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameN-terminal Domain of GRP94
Ligand NameRDA
EC.Number E.C.-.-.-.-
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=0.52uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference (2009) J.Mol.Biol. Vol. 388: pp. 1033-1042
Ligand Properties
Formula C18H16ClNO8
Molecular Weight 409.775
Exact Mass 409.056
No. of atoms 44
No. of bonds 45
Polar Surface Area 139.23
LOGP Value 1.81      (Computed with XLOGP3)
1.54      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P41148  
Entrez Gene IDNCBI Entrez Gene ID: 404019  
ASDInformation of known allosteric effects of PDB entries

 
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