Browse entries in the PDBbind-CN Database

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Related entries of code: 2oo8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2oscRCSB PDB    PDBbind317aa, >2OSC_1|Chain... at 99%
2p4iRCSB PDB    PDBbind317aa, >2P4I_1|Chains... at 99%
2wqbRCSB PDB    PDBbind324aa, >2WQB_1|Chain... *
6mweRCSB PDB    PDBbind317aa, >6MWE_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3be2RCSB PDB    PDBbindRAJ

Entry Information
PDB ID2oo8
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAngiopoietin-1 receptor
Ligand NameRAJ
EC.Number E.C.2.7.10.1
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)IC50=1nM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference Bioorg.Med.Chem.Lett. 17: 2886-2889
Ligand Properties
Formula C29H30F3N6O
Molecular Weight 535.583
Exact Mass 535.243
No. of atoms 69
No. of bonds 72
Polar Surface Area 84.24
LOGP Value 5.41      (Computed with XLOGP3)
5.08      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q02763  
Entrez Gene IDNCBI Entrez Gene ID: 7010  
ASDInformation of known allosteric effects of PDB entries

 
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