Browse entries in the PDBbind-CN Database

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Related entries of code: 2pmk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3b5jRCSB PDB    PDBbind243aa, >3B5J_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1i5dRCSB PDB    PDBbind128
2gvdRCSB PDB    PDBbind128
5a3sRCSB PDB    PDBbind128
5xw6RCSB PDB    PDBbind128

Entry Information
PDB ID2pmk
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAlpha-hemolysin translocation ATP-binding protein hlyB(HlyB-NBD)
Ligand Name128
EC.Number E.C.-.-.-.-
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)Kd=1.2uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Struct.Biol. Vol. 162: pp. 85-93
Ligand Properties
Formula C16H18N8O16P2
Molecular Weight 640.306
Exact Mass 640.032
No. of atoms 60
No. of bonds 64
Polar Surface Area 381.56
LOGP Value -3.97      (Computed with XLOGP3)
0.27      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 14
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 24
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P08716  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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