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Related entries of code: 2vmf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2vjxRCSB PDB    PDBbind846aa, >2VJX_1|Chains... *
2vl4RCSB PDB    PDBbind846aa, >2VL4_1|Chains... at 100%
2vo5RCSB PDB    PDBbind846aa, >2VO5_1|Chains... at 100%
2votRCSB PDB    PDBbind846aa, >2VOT_1|Chains... at 100%
2vqtRCSB PDB    PDBbind846aa, >2VQT_1|Chains... at 100%
2vr4RCSB PDB    PDBbind846aa, >2VR4_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2wzsRCSB PDB    PDBbindMVL
3d4yRCSB PDB    PDBbindMVL
4ayqRCSB PDB    PDBbindMVL
4re2RCSB PDB    PDBbindMVL
6f90RCSB PDB    PDBbindMVL
6f92RCSB PDB    PDBbindMVL
6rqkRCSB PDB    PDBbindMVL

Entry Information
PDB ID2vmf
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBeta-Mannosidase
Ligand NameMVL
EC.Number E.C.3.2.1.25
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=1400nM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Nat.Chem.Biol. Vol. 4: pp. 306
Ligand Properties
Formula C8H12N2O4
Molecular Weight 200.192
Exact Mass 200.080
No. of atoms 26
No. of bonds 27
Polar Surface Area 98.74
LOGP Value -2.43      (Computed with XLOGP3)
-1.81      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8AAK6  
Entrez Gene IDNCBI Entrez Gene ID: 60926418  
ASDInformation of known allosteric effects of PDB entries

 
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