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Related entries of code: 2vpp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1oe0RCSB PDB    PDBbind230aa, >1OE0_1|Chains... *
1zm7RCSB PDB    PDBbind230aa, >1ZM7_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4pd5RCSB PDB    PDBbindGEO

Entry Information
PDB ID2vpp
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDeoxyribonucleoside kinase (Dm-dNK)
Ligand NameGEO
EC.Number E.C.2.7.1.145
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)IC50=0.76uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Biochem.Biophys.Res.Commun. Vol. 382: pp. 430-433
Ligand Properties
Formula C9H11F2N3O4
Molecular Weight 263.198
Exact Mass 263.072
No. of atoms 29
No. of bonds 30
Polar Surface Area 110.6
LOGP Value -1.34      (Computed with XLOGP3)
-0.71      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9XZT6  
Entrez Gene IDNCBI Entrez Gene ID: 42273  
ASDInformation of known allosteric effects of PDB entries

 
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