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Related entries of code: 2vur
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2cbjRCSB PDB    PDBbind594aa, >2CBJ_1|Chains... *
2j62RCSB PDB    PDBbind594aa, >2J62_1|Chains... at 99%
2wb5RCSB PDB    PDBbind594aa, >2WB5_1|Chains... at 99%
2x0yRCSB PDB    PDBbind594aa, >2X0Y_1|Chains... at 100%
2xpkRCSB PDB    PDBbind594aa, >2XPK_1|Chains... at 99%
6rheRCSB PDB    PDBbind592aa, >6RHE_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2vur
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameClostridium perfringens, O-GlcNAc
Ligand NameYX1
EC.Number E.C.3.2.1.35
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)IC50=30uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Chem.Biol. Vol. 15: pp. 799-807
Ligand Properties
Formula C8H18N3O7
Molecular Weight 268.244
Exact Mass 268.114
No. of atoms 36
No. of bonds 36
Polar Surface Area 159.33
LOGP Value -2.75      (Computed with XLOGP3)
-4.31      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q0TR53  
Entrez Gene IDNCBI Entrez Gene ID: 29571445  
ASDInformation of known allosteric effects of PDB entries

 
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