Browse entries in the PDBbind-CN Database

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Related entries of code: 2x6f
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2x6iRCSB PDB    PDBbind696aa, >2X6I_1|Chains... at 100%
2x6jRCSB PDB    PDBbind696aa, >2X6J_1|Chains... at 100%
2x6kRCSB PDB    PDBbind696aa, >2X6K_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3magRCSB PDB    PDBbind3MA

Entry Information
PDB ID2x6f
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDROSOPHILA CLASS III PI3-KINASE VPS34
Ligand Name3MA
EC.Number E.C.2.7.1.137
Resolution 3.3(Å)
Affinity (Kd/Ki/IC50)IC50=25.713uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) Science Vol. 327: pp. 1638-1642
Ligand Properties
Formula C6H8N5
Molecular Weight 150.161
Exact Mass 150.078
No. of atoms 19
No. of bonds 20
Polar Surface Area 71.47
LOGP Value -0.12      (Computed with XLOGP3)
-0.05      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9W1M7  
Entrez Gene IDNCBI Entrez Gene ID: 37733  
ASDInformation of known allosteric effects of PDB entries

 
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