Browse entries in the PDBbind-CN Database

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Related entries of code: 2xgm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2xgoRCSB PDB    PDBbind568aa, >2XGO_1|Chains... at 100%
2xgsRCSB PDB    PDBbind568aa, >2XGS_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2xgm
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namebacterial O-GlcNAc transferase (OGT) orthologue from Xanthomonas campestris (XcOGT)
Ligand NameLXN
EC.Number E.C.-.-.-.-
Resolution 2.55(Å)
Affinity (Kd/Ki/IC50)Kd=1mM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Amino Acids, Vol. 40: pp. 781-792
Ligand Properties
Formula C4H2N2O4
Molecular Weight 142.070
Exact Mass 142.001
No. of atoms 12
No. of bonds 12
Polar Surface Area 92.34
LOGP Value -1.02      (Computed with XLOGP3)
-1.42      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8PC69  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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