Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2ybt
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2ybuRCSB PDB    PDBbind381aa, >2YBU_1|Chains... at 98%
3rm4RCSB PDB    PDBbind395aa, >3RM4_1|Chains... *
3rm8RCSB PDB    PDBbind395aa, >3RM8_1|Chains... at 100%
3rm9RCSB PDB    PDBbind395aa, >3RM9_1|Chains... at 100%
3rmeRCSB PDB    PDBbind395aa, >3RME_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID2ybt
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameACIDIC MAMMALIAN CHITINASE
Ligand NameDW0
EC.Number E.C.3.2.1.14
Resolution 2.22(Å)
Affinity (Kd/Ki/IC50)IC50=20uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Chem.Biol. Vol. 18: pp. 569
Ligand Properties
Formula C17H20N8O4
Molecular Weight 400.392
Exact Mass 400.161
No. of atoms 49
No. of bonds 52
Polar Surface Area 123.64
LOGP Value -0.73      (Computed with XLOGP3)
-1.73      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9BZP6  
Entrez Gene IDNCBI Entrez Gene ID: 27159  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com