Browse entries in the PDBbind-CN Database

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Related entries of code: 2ylc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3gibRCSB PDB    PDBbind68aa, >3GIB_1|Chains... at 100%
3qo3RCSB PDB    PDBbind65aa, >3QO3_1|Chains... at 100%
3rerRCSB PDB    PDBbind65aa, >3RER_1|Chains... at 100%
4ht8RCSB PDB    PDBbind65aa, >4HT8_1|Chains... at 100%
4ht9RCSB PDB    PDBbind65aa, >4HT9_1|Chains... at 100%
4qvcRCSB PDB    PDBbind65aa, >4QVC_1|Chains... at 100%
4qvdRCSB PDB    PDBbind65aa, >4QVD_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1loqRCSB PDB    PDBbindU
3g1dRCSB PDB    PDBbindU
Entry Information
PDB ID2ylc
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePROTEIN HFQ
Ligand NameU
EC.Number E.C.-.-.-.-
Resolution 1.3(Å)
Affinity (Kd/Ki/IC50)Kd=13nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Proc.Natl.Acad.Sci.USA Vol. 108: pp. 13065
Ligand Properties
Formula C9H14N2O8P
Molecular Weight 309.190
Exact Mass 309.049
No. of atoms 34
No. of bonds 35
Polar Surface Area 167.83
LOGP Value -3.56      (Computed with XLOGP3)
-2.88      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0A1R0  
Entrez Gene IDNCBI Entrez Gene ID: 1255887  
ASDInformation of known allosteric effects of PDB entries
 
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