Browse entries in the PDBbind-CN Database

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Related entries of code: 2zgm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3afkRCSB PDB    PDBbind167aa, >3AFK_1|Chains... at 100%
3m3cRCSB PDB    PDBbind159aa, >3M3C_1|Chains... at 100%
3m3eRCSB PDB    PDBbind161aa, >3M3E_1|Chains... at 99%
3m3oRCSB PDB    PDBbind158aa, >3M3O_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1gwvRCSB PDB    PDBbindLAT
1gzcRCSB PDB    PDBbindLAT
1z3vRCSB PDB    PDBbindLAT
2nn8RCSB PDB    PDBbindLAT
2y9gRCSB PDB    PDBbindLAT
5y97RCSB PDB    PDBbindLAT
Entry Information
PDB ID2zgm
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namerecombinant Agrocybe aegerita Anti-tumor lectin, rAAL mutant
Ligand NameLAT
EC.Number E.C.3.1.21.-
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Ki=16.4mM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) J.Mol.Biol. Vol. 387: pp. 694-705
Ligand Properties
Formula C12H22O11
Molecular Weight 342.296
Exact Mass 342.116
No. of atoms 45
No. of bonds 46
Polar Surface Area 189.53
LOGP Value -4.73      (Computed with XLOGP3)
-5.40      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 8
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q6WY08  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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