Browse entries in the PDBbind-CN Database

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Related entries of code: 2ybu
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2ybtRCSB PDB    PDBbind381aa, >2YBT_1|Chains... at 98%
3rm4RCSB PDB    PDBbind395aa, >3RM4_1|Chains... *
3rm8RCSB PDB    PDBbind395aa, >3RM8_1|Chains... at 100%
3rm9RCSB PDB    PDBbind395aa, >3RM9_1|Chains... at 100%
3rmeRCSB PDB    PDBbind395aa, >3RME_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID2ybu
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameACIDIC MAMMALIAN CHITINASE
Ligand NameCX9
EC.Number E.C.3.2.1.14
Resolution 2.25(Å)
Affinity (Kd/Ki/IC50)Ki=0.42uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Chem.Biol. Vol. 18: pp. 569
Ligand Properties
Formula C16H18N8O4
Molecular Weight 386.365
Exact Mass 386.145
No. of atoms 46
No. of bonds 49
Polar Surface Area 134.5
LOGP Value -0.68      (Computed with XLOGP3)
-1.74      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9BZP6  
Entrez Gene IDNCBI Entrez Gene ID: 27159  
ASDInformation of known allosteric effects of PDB entries
 
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