Browse entries in the PDBbind-CN Database

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Related entries of code: 3cbp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1xqhRCSB PDB    PDBbind264aa, >1XQH_1|Chains... *
4jlgRCSB PDB    PDBbind264aa, >4JLG_1|Chains... at 97%
5ayfRCSB PDB    PDBbind263aa, >5AYF_1|Chain... at 92%
5yltRCSB PDB    PDBbind263aa, >5YLT_1|Chain... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1aqjRCSB PDB    PDBbindSFG
1qaqRCSB PDB    PDBbindSFG
2h2jRCSB PDB    PDBbindSFG
2xyrRCSB PDB    PDBbindSFG
3lkzRCSB PDB    PDBbindSFG
6bdyRCSB PDB    PDBbindSFG
6ox0RCSB PDB    PDBbindSFG

Entry Information
PDB ID3cbp
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHistone-lysine N-methyltransferase SETD7 and Estrogen receptor peptide
Ligand NameSFG
EC.Number E.C.2.1.1.43
Resolution 1.42(Å)
Affinity (Kd/Ki/IC50)IC50=2.5uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2010) Bioorg. Med. Chem. Lett., Vol.20, pp.2103-2105
Ligand Properties
Formula C15H25N7O5
Molecular Weight 383.403
Exact Mass 383.192
No. of atoms 52
No. of bonds 54
Polar Surface Area 211.89
LOGP Value -4.28      (Computed with XLOGP3)
-2.92      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P03372  Q8WTS6  
Entrez Gene IDNCBI Entrez Gene ID: 2099  80854  
ASDInformation of known allosteric effects of PDB entries

 
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