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Related entries of code: 3d45
Entries with 90% protein sequence similarity cutoff in PDBbind
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Complexes with the same small molecule ligand
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No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3d45
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePoly(A)-specific ribonuclease PARN
Ligand Name7MG
EC.Number E.C.3.1.13.4
Resolution 3(Å)
Affinity (Kd/Ki/IC50)Kd=2.1uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Structure Vol. 2: pp. 276-286
Ligand Properties
Formula C11H19N5O7P
Molecular Weight 364.272
Exact Mass 364.102
No. of atoms 43
No. of bonds 45
Polar Surface Area 195.85
LOGP Value -2.57      (Computed with XLOGP3)
-2.49      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8VDG3  
Entrez Gene IDNCBI Entrez Gene ID: 74108  
ASDInformation of known allosteric effects of PDB entries

 
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