Browse entries in the PDBbind-CN Database

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Related entries of code: 3djo
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1n3zRCSB PDB    PDBbind124aa, >1N3Z:A|PDBID|CHAIN|... *
3djpRCSB PDB    PDBbind124aa, >3DJP:B|PDBID|CHAIN|... at 100%
3djqRCSB PDB    PDBbind124aa, >3DJQ:B|PDBID|CHAIN|... at 100%
3djvRCSB PDB    PDBbind124aa, >3DJV:B|PDBID|CHAIN|... at 100%
3djxRCSB PDB    PDBbind124aa, >3DJX:B|PDBID|CHAIN|... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1o0mRCSB PDB    PDBbindU2P

Entry Information
PDB ID3djo
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameSeminal ribonuclease
Ligand NameU2P
EC.Number E.C.3.1.27.5
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)Ki=40.8uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Eur.J.Med.Chem. Vol. 44: pp. 4496-4508
Ligand Properties
Formula C9H14N2O9P
Molecular Weight 325.189
Exact Mass 325.044
No. of atoms 35
No. of bonds 36
Polar Surface Area 188.06
LOGP Value -3.56      (Computed with XLOGP3)
-3.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00669  
Entrez Gene IDNCBI Entrez Gene ID: 280930  
ASDInformation of known allosteric effects of PDB entries

 
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