Browse entries in the PDBbind-CN Database

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Related entries of code: 3h98
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1nhuRCSB PDB    PDBbind578aa, >1NHU_1|Chains... at 94%
1nhvRCSB PDB    PDBbind578aa, >1NHV_1|Chains... at 94%
1os5RCSB PDB    PDBbind576aa, >1OS5_1|Chain... at 95%
1yvfRCSB PDB    PDBbind577aa, >1YVF_1|Chain... at 95%
1z4uRCSB PDB    PDBbind577aa, >1Z4U_1|Chain... at 95%
2d3uRCSB PDB    PDBbind570aa, >2D3U_1|Chains... at 95%
2d3zRCSB PDB    PDBbind570aa, >2D3Z_1|Chains... at 95%
2d41RCSB PDB    PDBbind570aa, >2D41_1|Chains... at 95%
2dxsRCSB PDB    PDBbind552aa, >2DXS_1|Chains... at 94%
2fvcRCSB PDB    PDBbind563aa, >2FVC_1|Chains... at 95%
2gc8RCSB PDB    PDBbind578aa, >2GC8_1|Chains... at 95%
2haiRCSB PDB    PDBbind576aa, >2HAI_1|Chain... at 95%
2hwhRCSB PDB    PDBbind576aa, >2HWH_1|Chains... at 94%
2hwiRCSB PDB    PDBbind576aa, >2HWI_1|Chains... at 94%
2i1rRCSB PDB    PDBbind576aa, >2I1R_1|Chains... at 94%
2jc0RCSB PDB    PDBbind570aa, >2JC0_1|Chains... at 95%
2o5dRCSB PDB    PDBbind576aa, >2O5D_1|Chains... at 94%
2qe2RCSB PDB    PDBbind578aa, >2QE2_1|Chains... at 95%
2qe5RCSB PDB    PDBbind578aa, >2QE5_1|Chains... at 95%
2wcxRCSB PDB    PDBbind537aa, >2WCX_1|Chain... at 95%
2whoRCSB PDB    PDBbind536aa, >2WHO_1|Chains... at 95%
2xwyRCSB PDB    PDBbind537aa, >2XWY_1|Chain... at 95%
2yojRCSB PDB    PDBbind585aa, >2YOJ_1|Chains... *
3br9RCSB PDB    PDBbind578aa, >3BR9_1|Chains... at 95%
3bscRCSB PDB    PDBbind578aa, >3BSC_1|Chains... at 95%
3cdeRCSB PDB    PDBbind578aa, >3CDE_1|Chains... at 95%
3cj2RCSB PDB    PDBbind576aa, >3CJ2_1|Chains... at 94%
3cj3RCSB PDB    PDBbind576aa, >3CJ3_1|Chains... at 94%
3cj4RCSB PDB    PDBbind576aa, >3CJ4_1|Chains... at 94%
3cj5RCSB PDB    PDBbind576aa, >3CJ5_1|Chains... at 94%
3co9RCSB PDB    PDBbind578aa, >3CO9_1|Chains... at 95%
3csoRCSB PDB    PDBbind581aa, >3CSO_1|Chains... at 99%
3cvkRCSB PDB    PDBbind578aa, >3CVK_1|Chains... at 95%
3cwjRCSB PDB    PDBbind578aa, >3CWJ_1|Chains... at 95%
3d28RCSB PDB    PDBbind578aa, >3D28_1|Chains... at 95%
3d5mRCSB PDB    PDBbind578aa, >3D5M_1|Chains... at 95%
3e51RCSB PDB    PDBbind578aa, >3E51_1|Chains... at 95%
3fqkRCSB PDB    PDBbind576aa, >3FQK_1|Chains... at 94%
3fqlRCSB PDB    PDBbind578aa, >3FQL_1|Chain... at 93%
3frzRCSB PDB    PDBbind576aa, >3FRZ_1|Chain... at 95%
3g86RCSB PDB    PDBbind576aa, >3G86_1|Chains... at 94%
3gnvRCSB PDB    PDBbind581aa, >3GNV_1|Chains... at 99%
3gnwRCSB PDB    PDBbind581aa, >3GNW_1|Chains... at 99%
3golRCSB PDB    PDBbind581aa, >3GOL_1|Chains... at 99%
3gynRCSB PDB    PDBbind578aa, >3GYN_1|Chains... at 95%
3h59RCSB PDB    PDBbind576aa, >3H59_1|Chains... at 94%
3h5sRCSB PDB    PDBbind576aa, >3H5S_1|Chains... at 94%
3h5uRCSB PDB    PDBbind576aa, >3H5U_1|Chains... at 94%
3hhkRCSB PDB    PDBbind563aa, >3HHK_1|Chains... at 95%
3hkyRCSB PDB    PDBbind581aa, >3HKY_1|Chains... at 99%
3igvRCSB PDB    PDBbind578aa, >3IGV_1|Chains... at 95%
3lkhRCSB PDB    PDBbind576aa, >3LKH_1|Chains... at 100%
3mf5RCSB PDB    PDBbind570aa, >3MF5_1|Chains... at 95%
3mwwRCSB PDB    PDBbind576aa, >3MWW_1|Chains... at 99%
3pheRCSB PDB    PDBbind576aa, >3PHE_1|Chains... at 94%
3q0zRCSB PDB    PDBbind574aa, >3Q0Z_1|Chains... at 94%
3skaRCSB PDB    PDBbind576aa, >3SKA_1|Chains... at 100%
3skeRCSB PDB    PDBbind576aa, >3SKE_1|Chains... at 100%
3skhRCSB PDB    PDBbind576aa, >3SKH_1|Chains... at 100%
3tyqRCSB PDB    PDBbind576aa, >3TYQ_1|Chains... at 100%
3tyvRCSB PDB    PDBbind576aa, >3TYV_1|Chains... at 100%
3u4oRCSB PDB    PDBbind578aa, >3U4O_1|Chains... at 100%
3u4rRCSB PDB    PDBbind578aa, >3U4R_1|Chains... at 100%
3uphRCSB PDB    PDBbind576aa, >3UPH_1|Chains... at 100%
3upiRCSB PDB    PDBbind585aa, >3UPI_1|Chains... at 100%
3vqsRCSB PDB    PDBbind578aa, >3VQS_1|Chains... at 95%
4druRCSB PDB    PDBbind563aa, >4DRU_1|Chains... at 99%
4eo6RCSB PDB    PDBbind577aa, >4EO6_1|Chains... at 94%
4eo8RCSB PDB    PDBbind577aa, >4EO8_1|Chains... at 94%
4gmcRCSB PDB    PDBbind576aa, >4GMC_1|Chains... at 99%
4ih5RCSB PDB    PDBbind570aa, >4IH5_1|Chains... at 95%
4ih6RCSB PDB    PDBbind570aa, >4IH6_1|Chains... at 95%
4ih7RCSB PDB    PDBbind570aa, >4IH7_1|Chains... at 95%
4iz0RCSB PDB    PDBbind576aa, >4IZ0_1|Chains... at 99%
4j04RCSB PDB    PDBbind576aa, >4J04_1|Chains... at 99%
4j06RCSB PDB    PDBbind576aa, >4J06_1|Chains... at 99%
4j08RCSB PDB    PDBbind576aa, >4J08_1|Chains... at 99%
4j0aRCSB PDB    PDBbind576aa, >4J0A_1|Chains... at 99%
4jjsRCSB PDB    PDBbind576aa, >4JJS_1|Chains... at 99%
4jjuRCSB PDB    PDBbind576aa, >4JJU_1|Chains... at 99%
4ju3RCSB PDB    PDBbind576aa, >4JU3_1|Chains... at 99%
4ju4RCSB PDB    PDBbind576aa, >4JU4_1|Chains... at 99%
4ju6RCSB PDB    PDBbind576aa, >4JU6_1|Chains... at 99%
4ju7RCSB PDB    PDBbind576aa, >4JU7_1|Chains... at 99%
4jvqRCSB PDB    PDBbind576aa, >4JVQ_1|Chains... at 99%
4kaiRCSB PDB    PDBbind577aa, >4KAI_1|Chains... at 95%
4kb7RCSB PDB    PDBbind580aa, >4KB7_1|Chains... at 95%
4kbiRCSB PDB    PDBbind580aa, >4KBI_1|Chains... at 95%
4mibRCSB PDB    PDBbind570aa, >4MIB_1|Chains... at 95%
4mk7RCSB PDB    PDBbind570aa, >4MK7_1|Chains... at 95%
4mk8RCSB PDB    PDBbind570aa, >4MK8_1|Chains... at 95%
4mk9RCSB PDB    PDBbind570aa, >4MK9_1|Chains... at 95%
4mkaRCSB PDB    PDBbind570aa, >4MKA_1|Chains... at 95%
4mz4RCSB PDB    PDBbind576aa, >4MZ4_1|Chains... at 100%
4nldRCSB PDB    PDBbind574aa, >4NLD_1|Chain... at 94%
4oowRCSB PDB    PDBbind578aa, >4OOW_1|Chains... at 99%
4tlrRCSB PDB    PDBbind578aa, >4TLR_1|Chain... at 95%
4tn2RCSB PDB    PDBbind577aa, >4TN2_1|Chain... at 95%
4txsRCSB PDB    PDBbind566aa, >4TXS_1|Chains... at 95%
4ty8RCSB PDB    PDBbind566aa, >4TY8_2|Chain... at 95%
4ty9RCSB PDB    PDBbind566aa, >4TY9_1|Chains... at 95%
4tyaRCSB PDB    PDBbind566aa, >4TYA_1|Chains... at 95%
4tybRCSB PDB    PDBbind566aa, >4TYB_1|Chains... at 95%
5czbRCSB PDB    PDBbind563aa, >5CZB_1|Chains... at 99%
5pzmRCSB PDB    PDBbind574aa, >5PZM_1|Chains... at 94%
5pznRCSB PDB    PDBbind574aa, >5PZN_1|Chains... at 94%
5trhRCSB PDB    PDBbind574aa, >5TRH_1|Chains... at 94%
5triRCSB PDB    PDBbind574aa, >5TRI_1|Chains... at 94%
5trjRCSB PDB    PDBbind574aa, >5TRJ_1|Chains... at 94%
5trkRCSB PDB    PDBbind574aa, >5TRK_1|Chains... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3h98
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHCV NS5B polymerase genotype 1b D21N-His-tagged
Ligand NameB5P
EC.Number E.C.2.7.7.48
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)IC50=5nM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Bioorg.Med.Chem.Lett. Vol. 19: pp. 4480-4483
Ligand Properties
Formula C19H24N6O6S2
Molecular Weight 496.560
Exact Mass 496.120
No. of atoms 57
No. of bonds 60
Polar Surface Area 179.82
LOGP Value -0.16      (Computed with XLOGP3)
2.84      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P26663  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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