Browse entries in the PDBbind-CN Database

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Related entries of code: 3hzm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1himRCSB PDB    PDBbind217aa, >1HIM_1|Chains... at 91%
2r1wRCSB PDB    PDBbind219aa, >2R1W_1|Chain... at 94%
2r1xRCSB PDB    PDBbind219aa, >2R1X_1|Chain... at 94%
2r1yRCSB PDB    PDBbind219aa, >2R1Y_1|Chain... at 94%
2r23RCSB PDB    PDBbind219aa, >2R23_1|Chain... at 94%
2r2bRCSB PDB    PDBbind219aa, >2R2B_1|Chain... at 94%
3bpcRCSB PDB    PDBbind219aa, >3BPC_1|Chain... at 94%
3hzkRCSB PDB    PDBbind219aa, >3HZK_1|Chain... at 94%
3hzvRCSB PDB    PDBbind219aa, >3HZV_1|Chain... at 94%
3hzyRCSB PDB    PDBbind219aa, >3HZY_1|Chain... at 94%
3i02RCSB PDB    PDBbind219aa, >3I02_1|Chains... at 94%
3ijhRCSB PDB    PDBbind219aa, >3IJH_1|Chains... at 94%
3ijyRCSB PDB    PDBbind218aa, >3IJY_1|Chains... at 94%
3ikcRCSB PDB    PDBbind218aa, >3IKC_1|Chains... at 94%
5kvdRCSB PDB    PDBbind220aa, >5KVD_2|Chain... at 91%
5kvfRCSB PDB    PDBbind220aa, >5KVF_2|Chain... at 91%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3k8dRCSB PDB    PDBbindKDO
Entry Information
PDB ID3hzm
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameS73-2 Fab (IgG1k)
Ligand NameKDO
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=3uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) Biochemistry Vol. 49: pp. 570-581
Ligand Properties
Formula C8H14O8
Molecular Weight 238.192
Exact Mass 238.069
No. of atoms 30
No. of bonds 30
Polar Surface Area 147.68
LOGP Value -1.96      (Computed with XLOGP3)
-3.38      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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