Browse entries in the PDBbind-CN Database

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Related entries of code: 3l3l
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1uk0RCSB PDB    PDBbind350aa, >1UK0_1|Chains... at 99%
1uk1RCSB PDB    PDBbind350aa, >1UK1_1|Chains... at 99%
1wokRCSB PDB    PDBbind350aa, >1WOK_1|Chains... at 99%
2rcwRCSB PDB    PDBbind350aa, >2RCW_1|Chain... at 99%
2rd6RCSB PDB    PDBbind350aa, >2RD6_1|Chain... at 100%
3gjwRCSB PDB    PDBbind350aa, >3GJW_1|Chain... at 100%
3gn7RCSB PDB    PDBbind350aa, >3GN7_1|Chain... at 100%
3l3mRCSB PDB    PDBbind350aa, >3L3M_1|Chain... at 100%
4hhyRCSB PDB    PDBbind355aa, >4HHY_1|Chains... at 98%
4hhzRCSB PDB    PDBbind355aa, >4HHZ_1|Chains... at 98%
4l6sRCSB PDB    PDBbind353aa, >4L6S_1|Chains... at 99%
4pjtRCSB PDB    PDBbind370aa, >4PJT_1|Chains... at 97%
4r5wRCSB PDB    PDBbind358aa, >4R5W_1|Chains... at 98%
4r6eRCSB PDB    PDBbind358aa, >4R6E_1|Chains... at 98%
4undRCSB PDB    PDBbind373aa, >4UND_1|Chains... *
4uxbRCSB PDB    PDBbind352aa, >4UXB_1|Chains... at 100%
4zzzRCSB PDB    PDBbind362aa, >4ZZZ_1|Chains... at 96%
5a00RCSB PDB    PDBbind362aa, >5A00_1|Chain... at 96%
5ha9RCSB PDB    PDBbind351aa, >5HA9_1|Chains... at 99%
5xsrRCSB PDB    PDBbind355aa, >5XSR_1|Chain... at 98%
5xstRCSB PDB    PDBbind350aa, >5XST_1|Chain... at 99%
5xsuRCSB PDB    PDBbind355aa, >5XSU_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3l3l
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namepoly(ADP-ribose) polymerase (PARP-1)
Ligand NameL3L
EC.Number E.C.2.4.2.30
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)Ki=33nM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) Bioorg. Med. Chem. Lett., Vol.20, pp.1023-1026
Ligand Properties
Formula C14H18N3O2
Molecular Weight 260.312
Exact Mass 260.140
No. of atoms 37
No. of bonds 39
Polar Surface Area 80.01
LOGP Value -0.05      (Computed with XLOGP3)
1.67      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P09874  
Entrez Gene IDNCBI Entrez Gene ID: 142  
ASDInformation of known allosteric effects of PDB entries
 
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