Browse entries in the PDBbind-CN Database

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Related entries of code: 3m93
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ej4RCSB PDB    PDBbind14aa, >1EJ4_2|Chain... at 100%
2v8wRCSB PDB    PDBbind14aa, >2V8W_2|Chains... at 100%
3m94RCSB PDB    PDBbind17aa, >3M94_2|Chain... at 100%
5nvnRCSB PDB    PDBbind38aa, >5NVN_2|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4b6uRCSB PDB    PDBbindM7G
4emfRCSB PDB    PDBbindM7G
4or4RCSB PDB    PDBbindM7G
5bv3RCSB PDB    PDBbindM7G

Entry Information
PDB ID3m93
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTranslation initiation factor 4E, eIF4E-3
Ligand NameM7G
EC.Number E.C.-.-.-.-
Resolution 2.9(Å)
Affinity (Kd/Ki/IC50)Kd=0.24uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Nucleic Acids Res. Vol. 39: pp. 8820-8832
Ligand Properties
Formula C11H21N5O11P2
Molecular Weight 461.259
Exact Mass 461.071
No. of atoms 50
No. of bonds 52
Polar Surface Area 279.36
LOGP Value -4.30      (Computed with XLOGP3)
-3.10      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q6PKX2  Q13541  
Entrez Gene IDNCBI Entrez Gene ID: 1978  
ASDInformation of known allosteric effects of PDB entries

 
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