Browse entries in the PDBbind-CN Database

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Related entries of code: 3nzk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3p3gRCSB PDB    PDBbind300aa, >3P3G_1|Chain... at 93%
3ps1RCSB PDB    PDBbind300aa, >3PS1_1|Chain... at 93%
4mdtRCSB PDB    PDBbind305aa, >4MDT_1|Chains... at 93%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3nzk
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, LpxC
Ligand NameC90
EC.Number E.C.3.5.1.33
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=0.54nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2010) Biochemistry Vol. 50: pp. 258-262
Ligand Properties
Formula C24H28N3O5
Molecular Weight 438.496
Exact Mass 438.203
No. of atoms 60
No. of bonds 62
Polar Surface Area 112.33
LOGP Value 1.32      (Computed with XLOGP3)
1.84      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A1JJJ9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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