Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3pcu
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3nsqRCSB PDB    PDBbind240aa, >3NSQ_1|Chains... at 100%
3r5mRCSB PDB    PDBbind240aa, >3R5M_1|Chains... at 100%
4n5gRCSB PDB    PDBbind244aa, >4N5G_1|Chains... at 98%
4n8rRCSB PDB    PDBbind244aa, >4N8R_1|Chains... at 98%
5mkjRCSB PDB    PDBbind230aa, >5MKJ_1|Chain... at 100%
5tbpRCSB PDB    PDBbind244aa, >5TBP_1|Chains... at 98%
6jnoRCSB PDB    PDBbind243aa, >6JNO_1|Chains... at 98%
5zquRCSB PDB    PDBbind243aa, >5ZQU_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3pcu
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRetinoic acid receptor RXR-alpha
Ligand NameLX8
EC.Number E.C.-.-.-.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=5.08uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Plos One Vol. 7: pp. e31811-e31811
Ligand Properties
Formula C21H24O5
Molecular Weight 356.412
Exact Mass 356.162
No. of atoms 50
No. of bonds 52
Polar Surface Area 65.74
LOGP Value 4.44      (Computed with XLOGP3)
3.90      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P19793  Q15596  
Entrez Gene IDNCBI Entrez Gene ID: 6256  10499  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com