Browse entries in the PDBbind-CN Database

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Related entries of code: 3pka
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3iu7RCSB PDB    PDBbind288aa, >3IU7_1|Chain... *
3iu8RCSB PDB    PDBbind288aa, >3IU8_1|Chain... at 100%
3iu9RCSB PDB    PDBbind288aa, >3IU9_1|Chain... at 100%
3pkbRCSB PDB    PDBbind285aa, >3PKB_1|Chain... at 100%
3pkcRCSB PDB    PDBbind285aa, >3PKC_1|Chain... at 100%
3pkdRCSB PDB    PDBbind285aa, >3PKD_1|Chain... at 100%
3pkeRCSB PDB    PDBbind285aa, >3PKE_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3pka
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMethionine aminopeptidase; MtMetAP1c
Ligand NameY02
EC.Number E.C.3.4.11.18
Resolution 1.25(Å)
Affinity (Kd/Ki/IC50)IC50=540nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Chemmedchem Vol. 6: pp. 1041-1048
Ligand Properties
Formula C23H37NO6
Molecular Weight 423.543
Exact Mass 423.262
No. of atoms 67
No. of bonds 67
Polar Surface Area 108.25
LOGP Value 2.52      (Computed with XLOGP3)
2.20      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 15
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WK19  
Entrez Gene IDNCBI Entrez Gene ID: 45426848  888596  
ASDInformation of known allosteric effects of PDB entries

 
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