Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3ubd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4el9RCSB PDB    PDBbind305aa, >4EL9_1|Chain... at 98%
4gueRCSB PDB    PDBbind305aa, >4GUE_1|Chain... at 98%
4nusRCSB PDB    PDBbind323aa, >4NUS_1|Chain... at 100%
4nw5RCSB PDB    PDBbind323aa, >4NW5_1|Chain... at 100%
4nw6RCSB PDB    PDBbind323aa, >4NW6_1|Chain... at 100%
5d9kRCSB PDB    PDBbind330aa, >5D9K_1|Chains... *
5d9lRCSB PDB    PDBbind323aa, >5D9L_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3ubd
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameN-terminal domain of RSK2 kinase
Ligand NameSL0
EC.Number E.C.2.7.11.1
Resolution 1.53(Å)
Affinity (Kd/Ki/IC50)Kd=2.9uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Biochemistry Vol. 51: pp. 6499-6510
Ligand Properties
Formula C25H24O12
Molecular Weight 516.451
Exact Mass 516.127
No. of atoms 61
No. of bonds 64
Polar Surface Area 182.19
LOGP Value 2.36      (Computed with XLOGP3)
1.92      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P18654  
Entrez Gene IDNCBI Entrez Gene ID: 110651  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com