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Related entries of code: 3v3l
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4qplRCSB PDB    PDBbindV3L

Entry Information
PDB ID3v3l
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameE3 ubiquitin-protein ligase RNF146
Ligand NameV3L
EC.Number E.C.6.3.2.-
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)Kd=0.37uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Genes Dev. Vol. 26: pp. 235-240
Ligand Properties
Formula C15H25N5O14P2
Molecular Weight 561.332
Exact Mass 561.087
No. of atoms 61
No. of bonds 64
Polar Surface Area 325.02
LOGP Value -6.50      (Computed with XLOGP3)
-3.58      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 19
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NTX7  
Entrez Gene IDNCBI Entrez Gene ID: 81847  
ASDInformation of known allosteric effects of PDB entries

 
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