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Related entries of code: 3vdb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1px4RCSB PDB    PDBbind1023aa, >1PX4_1|Chains... at 99%
3dyoRCSB PDB    PDBbind1023aa, >3DYO_1|Chains... at 99%
3i3bRCSB PDB    PDBbind1023aa, >3I3B_1|Chains... at 99%
3i3dRCSB PDB    PDBbind1023aa, >3I3D_1|Chains... at 99%
3muzRCSB PDB    PDBbind1052aa, >3MUZ_1|Chains... *
3mv0RCSB PDB    PDBbind1052aa, >3MV0_1|Chains... at 100%
3t08RCSB PDB    PDBbind1052aa, >3T08_1|Chains... at 99%
3t09RCSB PDB    PDBbind1052aa, >3T09_1|Chains... at 99%
3t0bRCSB PDB    PDBbind1052aa, >3T0B_1|Chains... at 99%
3t0dRCSB PDB    PDBbind1052aa, >3T0D_1|Chains... at 99%
3t2pRCSB PDB    PDBbind1052aa, >3T2P_1|Chains... at 99%
3t2qRCSB PDB    PDBbind1052aa, >3T2Q_1|Chains... at 99%
3vd4RCSB PDB    PDBbind1052aa, >3VD4_1|Chains... at 99%
3vd7RCSB PDB    PDBbind1052aa, >3VD7_1|Chains... at 99%
3vd9RCSB PDB    PDBbind1052aa, >3VD9_1|Chains... at 99%
3vdcRCSB PDB    PDBbind1052aa, >3VDC_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3i3bRCSB PDB    PDBbind149
3mv0RCSB PDB    PDBbind149
3t09RCSB PDB    PDBbind149
3t0dRCSB PDB    PDBbind149
3t2qRCSB PDB    PDBbind149

Entry Information
PDB ID3vdb
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameE. coli (lacZ) beta-galactosidase (N460T mutant)
Ligand Name149
EC.Number E.C.3.2.1.23
Resolution 2.05(Å)
Affinity (Kd/Ki/IC50)Ki=3.03mM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Arch.Biochem.Biophys. Vol. 521: pp. 51-61
Ligand Properties
Formula C6H10O6
Molecular Weight 178.140
Exact Mass 178.048
No. of atoms 22
No. of bonds 22
Polar Surface Area 107.22
LOGP Value -2.03      (Computed with XLOGP3)
-3.01      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00722  
Entrez Gene IDNCBI Entrez Gene ID: 945006  
ASDInformation of known allosteric effects of PDB entries

 
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