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Related entries of code: 3d4y
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1htyRCSB PDB    PDBbind1015aa, >1HTY_1|Chain... at 100%
1hwwRCSB PDB    PDBbind1015aa, >1HWW_1|Chain... at 100%
1hxkRCSB PDB    PDBbind1015aa, >1HXK_1|Chain... at 100%
1ps3RCSB PDB    PDBbind1045aa, >1PS3_1|Chain... *
1qwuRCSB PDB    PDBbind1045aa, >1QWU_1|Chain... at 98%
1qx1RCSB PDB    PDBbind1045aa, >1QX1_1|Chain... at 98%
2f18RCSB PDB    PDBbind1045aa, >2F18_1|Chain... at 98%
2f1aRCSB PDB    PDBbind1045aa, >2F1A_1|Chain... at 98%
2f1bRCSB PDB    PDBbind1045aa, >2F1B_1|Chain... at 98%
2f7oRCSB PDB    PDBbind1045aa, >2F7O_1|Chain... at 98%
2f7pRCSB PDB    PDBbind1045aa, >2F7P_1|Chain... at 98%
2fyvRCSB PDB    PDBbind1045aa, >2FYV_1|Chain... at 98%
2ow6RCSB PDB    PDBbind1045aa, >2OW6_1|Chain... at 98%
2ow7RCSB PDB    PDBbind1045aa, >2OW7_1|Chain... at 98%
3d4zRCSB PDB    PDBbind1045aa, >3D4Z_1|Chain... at 98%
3d50RCSB PDB    PDBbind1045aa, >3D50_1|Chain... at 98%
3d51RCSB PDB    PDBbind1045aa, >3D51_1|Chain... at 98%
3d52RCSB PDB    PDBbind1045aa, >3D52_1|Chain... at 98%
3ddfRCSB PDB    PDBbind1045aa, >3DDF_1|Chain... at 98%
3ddgRCSB PDB    PDBbind1045aa, >3DDG_1|Chain... at 98%
3dx0RCSB PDB    PDBbind1045aa, >3DX0_1|Chain... at 98%
3dx1RCSB PDB    PDBbind1045aa, >3DX1_1|Chain... at 98%
3dx2RCSB PDB    PDBbind1045aa, >3DX2_1|Chain... at 98%
3dx3RCSB PDB    PDBbind1045aa, >3DX3_1|Chain... at 98%
3dx4RCSB PDB    PDBbind1045aa, >3DX4_1|Chain... at 98%
3ejpRCSB PDB    PDBbind1045aa, >3EJP_1|Chain... at 98%
3ejqRCSB PDB    PDBbind1045aa, >3EJQ_1|Chain... at 98%
3ejrRCSB PDB    PDBbind1045aa, >3EJR_1|Chain... at 98%
3ejsRCSB PDB    PDBbind1045aa, >3EJS_1|Chain... at 98%
3ejtRCSB PDB    PDBbind1045aa, >3EJT_1|Chain... at 98%
3ejuRCSB PDB    PDBbind1045aa, >3EJU_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2vmfRCSB PDB    PDBbindMVL
2wzsRCSB PDB    PDBbindMVL
4ayqRCSB PDB    PDBbindMVL
4re2RCSB PDB    PDBbindMVL
6f90RCSB PDB    PDBbindMVL
6f92RCSB PDB    PDBbindMVL
6rqkRCSB PDB    PDBbindMVL

Entry Information
PDB ID3d4y
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamedGMII
Ligand NameMVL
EC.Number E.C.3.2.1.114
Resolution 1.52(Å)
Affinity (Kd/Ki/IC50)Ki=2uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Biochemistry Vol. 47: pp. 10058-10068
Ligand Properties
Formula C8H12N2O4
Molecular Weight 200.192
Exact Mass 200.080
No. of atoms 26
No. of bonds 27
Polar Surface Area 98.74
LOGP Value -2.43      (Computed with XLOGP3)
-1.81      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q24451  
Entrez Gene IDNCBI Entrez Gene ID: 41126  
ASDInformation of known allosteric effects of PDB entries

 
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