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Related entries of code: 3rik
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2nsxRCSB PDB    PDBbind497aa, >2NSX_1|Chains... at 100%
2v3dRCSB PDB    PDBbind505aa, >2V3D_1|Chains... *
2v3eRCSB PDB    PDBbind505aa, >2V3E_1|Chains... at 100%
2wcgRCSB PDB    PDBbind505aa, >2WCG_1|Chains... at 100%
2xwdRCSB PDB    PDBbind505aa, >2XWD_1|Chains... at 100%
2xweRCSB PDB    PDBbind505aa, >2XWE_1|Chains... at 100%
3rilRCSB PDB    PDBbind497aa, >3RIL_1|Chains... at 100%
5lvxRCSB PDB    PDBbind497aa, >5LVX_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3rik
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGlucosylceramidase
Ligand Name3RI
EC.Number E.C.3.2.1.45
Resolution 2.48(Å)
Affinity (Kd/Ki/IC50)IC50=3.4mM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Biochemistry Vol. 50: pp. 10647-10657
Ligand Properties
Formula C8H18NO5
Molecular Weight 208.232
Exact Mass 208.118
No. of atoms 32
No. of bonds 32
Polar Surface Area 105.59
LOGP Value -3.12      (Computed with XLOGP3)
-3.11      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P04062  
Entrez Gene IDNCBI Entrez Gene ID: 2629  
ASDInformation of known allosteric effects of PDB entries
 
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