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Related entries of code: 3vd7
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1px4RCSB PDB    PDBbind1023aa, >1PX4_1|Chains... at 99%
3dyoRCSB PDB    PDBbind1023aa, >3DYO_1|Chains... at 99%
3i3bRCSB PDB    PDBbind1023aa, >3I3B_1|Chains... at 99%
3i3dRCSB PDB    PDBbind1023aa, >3I3D_1|Chains... at 99%
3muzRCSB PDB    PDBbind1052aa, >3MUZ_1|Chains... *
3mv0RCSB PDB    PDBbind1052aa, >3MV0_1|Chains... at 100%
3t08RCSB PDB    PDBbind1052aa, >3T08_1|Chains... at 99%
3t09RCSB PDB    PDBbind1052aa, >3T09_1|Chains... at 99%
3t0bRCSB PDB    PDBbind1052aa, >3T0B_1|Chains... at 99%
3t0dRCSB PDB    PDBbind1052aa, >3T0D_1|Chains... at 99%
3t2pRCSB PDB    PDBbind1052aa, >3T2P_1|Chains... at 99%
3t2qRCSB PDB    PDBbind1052aa, >3T2Q_1|Chains... at 99%
3vd4RCSB PDB    PDBbind1052aa, >3VD4_1|Chains... at 99%
3vd9RCSB PDB    PDBbind1052aa, >3VD9_1|Chains... at 99%
3vdbRCSB PDB    PDBbind1052aa, >3VDB_1|Chains... at 99%
3vdcRCSB PDB    PDBbind1052aa, >3VDC_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3vd7
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameE. coli (lacZ) beta-galactosidase (N460S mutant)
Ligand NameGTZ
EC.Number E.C.3.2.1.23
Resolution 2.87(Å)
Affinity (Kd/Ki/IC50)Ki=0.033mM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Arch.Biochem.Biophys. Vol. 521: pp. 51-61
Ligand Properties
Formula C6H10N4O4
Molecular Weight 202.168
Exact Mass 202.070
No. of atoms 24
No. of bonds 25
Polar Surface Area 124.52
LOGP Value -2.88      (Computed with XLOGP3)
-3.02      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00722  
Entrez Gene IDNCBI Entrez Gene ID: 945006  
ASDInformation of known allosteric effects of PDB entries

 
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