Browse entries in the PDBbind-CN Database

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Related entries of code: 4ayq
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4aypRCSB PDB    PDBbind447aa, >4AYP_1|Chain... *
4ayrRCSB PDB    PDBbind447aa, >4AYR_1|Chain... at 100%
5mehRCSB PDB    PDBbind447aa, >5MEH_1|Chain... at 100%
5ne5RCSB PDB    PDBbind447aa, >5NE5_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2vmfRCSB PDB    PDBbindMVL
2wzsRCSB PDB    PDBbindMVL
3d4yRCSB PDB    PDBbindMVL
4re2RCSB PDB    PDBbindMVL
6f90RCSB PDB    PDBbindMVL
6f92RCSB PDB    PDBbindMVL
6rqkRCSB PDB    PDBbindMVL

Entry Information
PDB ID4ayq
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE
Ligand NameMVL
EC.Number E.C.3.2.1.113
Resolution 1.1(Å)
Affinity (Kd/Ki/IC50)Kd=47nM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Angew.Chem.Int.Ed.Engl. Vol. 51: pp. 10997
Ligand Properties
Formula C8H12N2O4
Molecular Weight 200.192
Exact Mass 200.080
No. of atoms 26
No. of bonds 27
Polar Surface Area 98.74
LOGP Value -2.43      (Computed with XLOGP3)
-1.81      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): B0SWV2  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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