Browse entries in the PDBbind-CN Database

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Related entries of code: 4dpu
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3qt6RCSB PDB    PDBbind332aa, >3QT6_1|Chains... *
3qt7RCSB PDB    PDBbind332aa, >3QT7_1|Chains... at 100%
4dptRCSB PDB    PDBbind332aa, >4DPT_1|Chains... at 100%
4dpyRCSB PDB    PDBbind332aa, >4DPY_1|Chains... at 99%
4du8RCSB PDB    PDBbind332aa, >4DU8_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3qt7RCSB PDB    PDBbindFM0
4dptRCSB PDB    PDBbindFM0
Entry Information
PDB ID4dpu
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMevalonate diphosphate decarboxylase(S192A mutant)
Ligand NameFM0
EC.Number E.C.4.1.1.33
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Ki=50nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Biochemistry Vol. 51: pp. 5611-5621
Ligand Properties
Formula C6H15FO10P2
Molecular Weight 328.123
Exact Mass 328.012
No. of atoms 34
No. of bonds 33
Polar Surface Area 204.32
LOGP Value -2.05      (Computed with XLOGP3)
-1.10      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9FD73  
Entrez Gene IDNCBI Entrez Gene ID: 50019476  
ASDInformation of known allosteric effects of PDB entries
 
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