Browse entries in the PDBbind-CN Database

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Related entries of code: 4dzy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3tz0RCSB PDB    PDBbind418aa, >3TZ0_1|Chain... *
3tz2RCSB PDB    PDBbind418aa, >3TZ2_1|Chain... at 100%
3tz4RCSB PDB    PDBbind418aa, >3TZ4_1|Chain... at 100%
4h7qRCSB PDB    PDBbind418aa, >4H7Q_1|Chain... at 100%
4h81RCSB PDB    PDBbind418aa, >4H81_1|Chain... at 100%
4h85RCSB PDB    PDBbind418aa, >4H85_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4dzy
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Name[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial
Ligand NameWJ1
EC.Number E.C.2.7.11.4
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=2.4uM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Proc.Natl.Acad.Sci.USA. Vol. 110: pp. 9728鈥9733
Ligand Properties
Formula C9H9ClO2
Molecular Weight 184.620
Exact Mass 184.029
No. of atoms 21
No. of bonds 21
Polar Surface Area 37.3
LOGP Value 3.29      (Computed with XLOGP3)
1.92      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q00972  
Entrez Gene IDNCBI Entrez Gene ID: 29603  
ASDInformation of known allosteric effects of PDB entries

 
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