Browse entries in the PDBbind-CN Database

Display Options: Structure:  

Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4i47
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4emfRCSB PDB    PDBbind246aa, >4EMF:A|PDBID|CHAIN|... *
4emrRCSB PDB    PDBbind246aa, >4EMR:A|PDBID|CHAIN|... at 100%
4zt8RCSB PDB    PDBbind246aa, >4ZT8:A|PDBID|CHAIN|... at 100%
5csoRCSB PDB    PDBbind246aa, >5CSO:A|PDBID|CHAIN|... at 100%
5cstRCSB PDB    PDBbind246aa, >5CST:A|PDBID|CHAIN|... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4i47
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamerRNA N-glycosidase
Ligand NameMY6
EC.Number E.C.
Resolution 2.65(Å)
Affinity (Kd/Ki/IC50)Kd=0.12uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Proteins Vol. 81: pp. 896-905
Ligand Properties
Formula C6H7N5O
Molecular Weight 165.153
Exact Mass 165.065
No. of atoms 19
No. of bonds 20
Polar Surface Area 89.59
LOGP Value -1.12      (Computed with XLOGP3)
-0.18      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): D9J2T9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

This site has been visited times since Nov 2007.

Address: 826 Zhangheng Road, Shanghai 201203, People's Republic of China      ICP NO: Shanghai-05005485-2
Group Leader:      Tel: +86-21-54925128      Webmaster:
Copyright ©2007-2020    Department of Medicinal Chemistry, School of Pharmacy, Fudan University, P.R. China