Browse entries in the PDBbind-CN Database

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Related entries of code: 4lil
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6r4sRCSB PDB    PDBbind410aa, >6R4S_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6czbRCSB PDB    PDBbindUTP
6aehRCSB PDB    PDBbindUTP

Entry Information
PDB ID4lil
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDNA primase small subunit
Ligand NameUTP
EC.Number E.C.2.7.7
Resolution 2.6(Å)
Affinity (Kd/Ki/IC50)Kd=12.5uM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2014) J.Mol.Biol. Vol. 426: pp. 558-569
Ligand Properties
Formula H8O10P3
Molecular Weight 260.979
Exact Mass 260.933
No. of atoms 21
No. of bonds 20
Polar Surface Area 221.07
LOGP Value -4.69      (Computed with XLOGP3)
-2.01      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P49642  
Entrez Gene IDNCBI Entrez Gene ID: 5557  
ASDInformation of known allosteric effects of PDB entries

 
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