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Related entries of code: 4nkt
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4nkuRCSB PDB    PDBbind341aa, >4NKU_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4nkt
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePoly(A) RNA polymerase protein cid1
Ligand Name2KH
EC.Number E.C.2.7.7
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Kd=1.08uM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Nucleic Acids Res. Vol. 42: pp. 3372-3380
Ligand Properties
Formula C9H19N3O14P3
Molecular Weight 486.180
Exact Mass 486.008
No. of atoms 48
No. of bonds 49
Polar Surface Area 317.42
LOGP Value -6.75      (Computed with XLOGP3)
-3.85      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O13833  
Entrez Gene IDNCBI Entrez Gene ID: 2542420  
ASDInformation of known allosteric effects of PDB entries

 
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