Browse entries in the PDBbind-CN Database

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Related entries of code: 4jpa
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1eubRCSB PDB    PDBbind171aa, >1EUB_1|Chain... at 100%
1flsRCSB PDB    PDBbind165aa, >1FLS_1|Chain... at 100%
1xucRCSB PDB    PDBbind171aa, >1XUC_1|Chains... at 100%
1xudRCSB PDB    PDBbind171aa, >1XUD_1|Chains... at 100%
1xurRCSB PDB    PDBbind171aa, >1XUR_1|Chains... at 100%
1youRCSB PDB    PDBbind168aa, >1YOU_1|Chains... at 100%
1ztqRCSB PDB    PDBbind165aa, >1ZTQ_1|Chains... at 100%
2d1nRCSB PDB    PDBbind166aa, >2D1N_1|Chains... at 100%
2ow9RCSB PDB    PDBbind170aa, >2OW9_1|Chains... at 98%
2ozrRCSB PDB    PDBbind170aa, >2OZR_1|Chains... at 98%
2pjtRCSB PDB    PDBbind165aa, >2PJT_1|Chains... at 100%
2yigRCSB PDB    PDBbind171aa, >2YIG_1|Chains... at 100%
3elmRCSB PDB    PDBbind171aa, >3ELM_1|Chains... at 100%
3i7gRCSB PDB    PDBbind171aa, >3I7G_1|Chains... at 100%
3i7iRCSB PDB    PDBbind171aa, >3I7I_1|Chains... at 100%
3kecRCSB PDB    PDBbind167aa, >3KEC_1|Chains... at 100%
3kejRCSB PDB    PDBbind167aa, >3KEJ_1|Chains... at 100%
3kekRCSB PDB    PDBbind167aa, >3KEK_1|Chains... at 100%
3kryRCSB PDB    PDBbind164aa, >3KRY_1|Chains... at 100%
3ljzRCSB PDB    PDBbind164aa, >3LJZ_1|Chains... at 99%
3tvcRCSB PDB    PDBbind169aa, >3TVC_1|Chain... at 100%
3wv1RCSB PDB    PDBbind171aa, >3WV1_1|Chains... at 100%
3wv2RCSB PDB    PDBbind171aa, >3WV2_1|Chains... at 100%
3wv3RCSB PDB    PDBbind171aa, >3WV3_1|Chains... at 100%
3zxhRCSB PDB    PDBbind171aa, >3ZXH_1|Chains... at 100%
456cRCSB PDB    PDBbind168aa, >456C_1|Chains... at 100%
4a7bRCSB PDB    PDBbind169aa, >4A7B_1|Chains... at 100%
4l19RCSB PDB    PDBbind171aa, >4L19_1|Chains... at 100%
5b5oRCSB PDB    PDBbind172aa, >5B5O_1|Chains... at 100%
5b5pRCSB PDB    PDBbind172aa, >5B5P_1|Chains... at 100%
5botRCSB PDB    PDBbind171aa, >5BOT_1|Chains... at 100%
5boyRCSB PDB    PDBbind171aa, >5BOY_1|Chains... at 100%
5bpaRCSB PDB    PDBbind171aa, >5BPA_1|Chains... at 100%
5uwkRCSB PDB    PDBbind172aa, >5UWK_1|Chains... at 99%
5uwlRCSB PDB    PDBbind172aa, >5UWL_1|Chains... at 99%
5uwmRCSB PDB    PDBbind172aa, >5UWM_1|Chains... at 99%
5uwnRCSB PDB    PDBbind172aa, >5UWN_1|Chains... at 99%
830cRCSB PDB    PDBbind168aa, >830C_1|Chains... at 100%
6hv2RCSB PDB    PDBbind168aa, >6HV2_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4jpa
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameCollagenase 3, MMP13
Ligand NameAZ6
EC.Number E.C.3.4.24
Resolution 2(Å)
Affinity (Kd/Ki/IC50)IC50=3.3nM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Bioorg.Med.Chem.Lett. Vol. 23: pp. 4705-4712
Ligand Properties
Formula C21H23N7O5S
Molecular Weight 485.516
Exact Mass 485.148
No. of atoms 57
No. of bonds 60
Polar Surface Area 166
LOGP Value -0.14      (Computed with XLOGP3)
1.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P45452  
Entrez Gene IDNCBI Entrez Gene ID: 4322  
ASDInformation of known allosteric effects of PDB entries

 
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