Browse entries in the PDBbind-CN Database

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Related entries of code: 4kxl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4fyhRCSB PDB    PDBbind152aa, >4FYH_1|Chains... *
4kxmRCSB PDB    PDBbind152aa, >4KXM_1|Chains... at 100%
4kxnRCSB PDB    PDBbind152aa, >4KXN_1|Chains... at 100%
4p5dRCSB PDB    PDBbind152aa, >4P5D_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4kxl
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name2'-deoxynucleoside 5'-phosphate N-hydrolase 1, DNPH1 (RCL)
Ligand Name6C6
EC.Number E.C.3.2.2
Resolution 1.69(Å)
Affinity (Kd/Ki/IC50)Kd=0.6uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Plos One Vol. 8: pp. e80755-e80755
Ligand Properties
Formula C15H23N5O7P
Molecular Weight 416.346
Exact Mass 416.134
No. of atoms 51
No. of bonds 54
Polar Surface Area 188.83
LOGP Value -1.78      (Computed with XLOGP3)
-0.46      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O35820  
Entrez Gene IDNCBI Entrez Gene ID: 171047  
ASDInformation of known allosteric effects of PDB entries

 
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