Browse entries in the PDBbind-CN Database

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Related entries of code: 4tmf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2pgjRCSB PDB    PDBbind262aa, >2PGJ_1|Chains... *
2pglRCSB PDB    PDBbind262aa, >2PGL_1|Chains... at 99%
3u4hRCSB PDB    PDBbind262aa, >3U4H_1|Chains... at 100%
3u4iRCSB PDB    PDBbind262aa, >3U4I_1|Chains... at 100%
4xjsRCSB PDB    PDBbind262aa, >4XJS_1|Chain... at 96%
4xjtRCSB PDB    PDBbind262aa, >4XJT_1|Chain... at 96%
6edrRCSB PDB    PDBbind257aa, >6EDR_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4tmf
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman CD38
Ligand NameJS2
EC.Number E.C.3.2.2.6
Resolution 2.05(Å)
Affinity (Kd/Ki/IC50)IC50=3.3uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2014) J.Med.Chem. Vol. 57: pp. 8517-8529
Ligand Properties
Formula C14H25N5O12P2
Molecular Weight 517.322
Exact Mass 517.097
No. of atoms 58
No. of bonds 60
Polar Surface Area 295.3
LOGP Value -4.80      (Computed with XLOGP3)
-2.12      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 14
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P28907  
Entrez Gene IDNCBI Entrez Gene ID: 952  
ASDInformation of known allosteric effects of PDB entries

 
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