Browse entries in the PDBbind-CN Database

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Related entries of code: 4ykk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4ykjRCSB PDB    PDBbind256aa, >4YKJ_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1pb8RCSB PDB    PDBbindDSN
2rc8RCSB PDB    PDBbindDSN
2rcbRCSB PDB    PDBbindDSN
2v3uRCSB PDB    PDBbindDSN

Entry Information
PDB ID4ykk
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMnemiopsis leidyi ML032222a iGluR LBD
Ligand NameDSN
EC.Number E.C.-.-.-.-
Resolution 1.38(Å)
Affinity (Kd/Ki/IC50)Ki=1.7mM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Proc.Natl.Acad.Sci.USA Vol. 112: pp. E6048-E6057
Ligand Properties
Formula C3H8NO3
Molecular Weight 106.101
Exact Mass 106.050
No. of atoms 15
No. of bonds 14
Polar Surface Area 85.17
LOGP Value -3.17      (Computed with XLOGP3)
-2.33      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A0R4I973  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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